YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CWH43
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.85
Transmembrane Helix	11	32	0.91
Non-Cytoplasmic	33	63	0.92
Transmembrane Helix	64	85	0.87
Cytoplasmic	86	91	0.80
Transmembrane Helix	92	111	0.91
Non-Cytoplasmic	112	117	0.87
Transmembrane Helix	118	137	0.90
Cytoplasmic	138	149	0.80
Transmembrane Helix	150	168	0.95
Non-Cytoplasmic	169	180	0.77
Transmembrane Helix	181	201	0.84
Cytoplasmic	202	268	0.92
Transmembrane Helix	269	291	0.78
Non-Cytoplasmic	292	297	0.62
Transmembrane Helix	298	321	0.81
Cytoplasmic	322	326	0.77
Transmembrane Helix	327	346	0.91
Non-Cytoplasmic	347	352	0.75
Transmembrane Helix	353	373	0.88
Cytoplasmic	374	380	0.85
Transmembrane Helix	381	402	0.91
Non-Cytoplasmic	403	420	0.88
Transmembrane Helix	421	439	0.92
Cytoplasmic	440	453	0.89
Transmembrane Helix	454	475	0.94
Non-Cytoplasmic	476	495	0.94
Transmembrane Helix	496	516	0.90
Cytoplasmic	517	522	0.81
Transmembrane Helix	523	542	0.91
Non-Cytoplasmic	543	547	0.81
Transmembrane Helix	548	569	0.89
Cytoplasmic	570	575	0.83
Transmembrane Helix	576	598	0.89
Non-Cytoplasmic	599	612	0.82
Transmembrane Helix	613	634	0.89
Cytoplasmic	635	642	0.91
Transmembrane Helix	643	663	0.96
Non-Cytoplasmic	664	953	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIINGKIIP IAHTICAFSA FFAALVTGYS LHFHKIVTNA HYTYPDEWFP SVSATIGDRY  60
   61 PERSIFQILI ALTAFPRFLL LLGHYYLNQS KVCFLVGVLR TVSCGGWVYI TSTDDHDIHD 120
  121 IFMITYIVLT LPWDIMITRY SSPLTSKNKG LTATIFFGTL FPMIYWYIQH SVQQRAGAYS 180
  181 IYAYFEWSLI LLDIAFDAFA YADFKKIDIV LAFNEKPGNT SFFQIRDSSP INYGEEKSSE 240
  241 LQKSGEKKVE KEKPVARSAT GSYFRFDSFF YLLTNIFNGF LFWSNVTSLL CSIWHFPLWY 300
  301 MGISGYEAAI LGYLGPIFLY LPFVSEAFTQ YGVLLGGIIA IGAYIVQMPE LRLISVAVGT 360
  361 SITVATFVQN LRYITNAETS FSFALTWLLG LVASVILKMG FYTNNPTWVI LDERNGGYNK 420
  421 TALVLTVLFG MLSPYVNSIN FEGKRNAQAK SASLIGKLFL AVGFGSLLFG IHQLLTDSST 480
  481 TIYWAWEGYN ESHGPLPWPW GALTCTVMLF ASLSSVKFMG KPLVPCLLLL ISTAVLSARS 540
  541 ITQWPKYIFG GLLYAIAMLW LVPSYFSALG QVQNIWVYVL SFSVYIIFVL AHVWVVAYAF 600
  601 VPMGWVLREK IETVLAFSST FIIIGALTCK NLNIQLVTMG KKFFIYVFFF AVALLSLTAR 660
  661 FVYDIRPTGI PQPYHPDSQL ITAGIWTIHF GLDNDMWASE DRMINLIKDM ELDVVGLLET 720
  721 DTQRITMGNR DLTSKLAHDL NMYADFGPGP NKHTWGCVLL SKFPIVNSTH HLLPSPVGEL 780
  781 APAIHATLQT YNDTLVDVFV FHSGQEEDEE DRRLQSNYMA KLMGNTTRPA ILLSYLVVDP 840
  841 GEGNYNTYVS ETSGMHDIDP SDDDRWCEYI LYRGLRRTGY ARVARGTITD TELQVGKFQV 900
  901 LSEQALVEHS DSMYEYGHMS EPEYEDMKFP DKFLGEGERG HFYHVFDEPR YYL