YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSH1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.96
Transmembrane Helix	33	53	0.87
Non-Cytoplasmic	54	81	0.86
Transmembrane Helix	82	103	0.83
Cytoplasmic	104	118	0.91
Transmembrane Helix	119	141	0.88
Non-Cytoplasmic	142	146	0.84
Transmembrane Helix	147	167	0.92
Cytoplasmic	168	174	0.80
Transmembrane Helix	175	195	0.90
Non-Cytoplasmic	196	246	0.93
Transmembrane Helix	247	266	0.95
Cytoplasmic	267	285	0.92
Transmembrane Helix	286	308	0.90
Non-Cytoplasmic	309	363	0.79
Transmembrane Helix	364	382	0.91
Cytoplasmic	383	419	0.65
Transmembrane Helix	420	441	0.79
Non-Cytoplasmic	442	449	0.46
Transmembrane Helix	450	469	0.85
Cytoplasmic	470	490	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGFRLIDIV KPILPILPEV ELPFEKLPFD DKIVYTIFAG LIYLFAQFPL VGLPKATTPN  60
   61 VNDPIYFLRG VFGCEPRTLL EFGLFPNISS GLILQLLAGL KVIKVNFKIQ SDRELFQSLT 120
  121 KVFAIVQYVI LTNIFIFAGY FGDDLSVVQI GLINFQLVGA GIFTTLLAEV IDKGFGFSSG 180
  181 AMIINTVVIA TNLVADTFGV SQIKVGEDDQ TEAQGALINL IQGLRSKHKT FIGGIISAFN 240
  241 RDYLPNLTTT IIVLAIAIIV CYLQSVRVEL PIRSTRARGT NNVYPIKLLY TGCLSVLFSY 300
  301 TILFYIHIFA FVLIQLVAKN EPTHIICKIM GHYENANNLL AVPTFPLSLL APPTSFFKGV 360
  361 TQQPLTFITY SAFILVTGIW FADKWQAISG SSARDVALEF KDQGITLMGR REQNVAKELN 420
  421 KVIPIAAVTG ASVLSLITVI GESLGLKGKA AGIVVGIAGG FSLLEVITIE YQQSGGQSAL 480
  481 NQVLGVPGAM