YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GDT1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.93
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	40	0.87
Transmembrane Helix	41	61	0.89
Cytoplasmic	62	71	0.85
Transmembrane Helix	72	94	0.92
Non-Cytoplasmic	95	103	0.69
Transmembrane Helix	104	122	0.92
Cytoplasmic	123	183	0.99
Transmembrane Helix	184	203	0.94
Non-Cytoplasmic	204	222	0.90
Transmembrane Helix	223	244	0.93
Cytoplasmic	245	254	0.74
Transmembrane Helix	255	275	0.92
Non-Cytoplasmic	276	280	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNMIKKASL IALLPLFTAA AAAATDAETS MESGSSSHLK SFLMSVSMIG LSEIGDKTFL  60
   61 IAALMAMRHK RVLVFSAAAT SLAIMTILSG VVGHSAVAFL SERYTAFFAG ILFLVFGYKL 120
  121 TMEGLEMSKD AGVEEEMAEV EEEIAIKDMN QDMDDVEKGG DTAYDKQLKN ASIGKKIVHR 180
  181 IRELASFMFS PVWVQIFLMV FLGELGDRSQ ISIIAMATDS DYWYVIAGAV IGHAICSGLA 240
  241 VVGGKLLATR ISIRTITLAS SLLFFIFALM YIYQAFTTQD