YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YPC1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIFRWNYPE SSVPGVWGET TSTIDWCEEN YVVSPYIAEW SNTLTNSVFI LSAIYTTYSA  60
   61 YKNKLEKRFL LIGFGYGLVG VGSWLFHMTL KYRFQLLDEL PMIYAMCIPT WSLVCEAKEA 120
  121 LLNGDNHKKV PLFEQIFIGV IIGLAVTTAS ILYVIYKNVD IHQILFGVQI VVVAATAGSL 180
  181 TYRYVHDPLA KRNLKASMAL GAILFLSGYI SWLLDIHYCS FWVHVRRSIL ALPLGVLLEP 240
  241 HGWWHILTGM GIYFYIVSLE HLRVITLNVS CNYQFIWRWK VFPELIWKGR KPSTRYSLEL 300
  301 FGPYVEDQSI EVKKEK

Type	Start	End	Confidence
Cytoplasmic	1	68	0.67
Transmembrane Helix	69	88	0.95
Non-Cytoplasmic	89	99	0.70
Transmembrane Helix	100	115	0.90
Cytoplasmic	116	135	0.79
Transmembrane Helix	136	156	0.95
Non-Cytoplasmic	157	163	0.80
Transmembrane Helix	164	185	0.93
Cytoplasmic	186	195	0.84
Transmembrane Helix	196	214	0.93
Non-Cytoplasmic	215	240	0.84
Transmembrane Helix	241	259	0.86
Cytoplasmic	260	316	0.93