YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	QDR3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	108	0.99
Transmembrane Helix	109	131	0.93
Non-Cytoplasmic	132	141	0.86
Transmembrane Helix	142	163	0.93
Cytoplasmic	164	173	0.86
Transmembrane Helix	174	193	0.94
Non-Cytoplasmic	194	199	0.79
Transmembrane Helix	200	225	0.84
Cytoplasmic	226	233	0.91
Transmembrane Helix	234	256	0.91
Non-Cytoplasmic	257	263	0.86
Transmembrane Helix	264	283	0.95
Cytoplasmic	284	472	0.98
Transmembrane Helix	473	493	0.91
Non-Cytoplasmic	494	512	0.89
Transmembrane Helix	513	534	0.93
Cytoplasmic	535	554	0.92
Transmembrane Helix	555	577	0.92
Non-Cytoplasmic	578	586	0.80
Transmembrane Helix	587	609	0.89
Cytoplasmic	610	619	0.84
Transmembrane Helix	620	642	0.81
Non-Cytoplasmic	643	647	0.78
Transmembrane Helix	648	668	0.94
Cytoplasmic	669	689	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAQGSQSNV GSLRSNCSDN SLPNNHVMMH CDESSGTPHS EHNDYSYEKT NLESTASNSR  60
   61 EHRDNQLSRL KSEEYVVPKN QRRGLLPQLA IIPEFKDARD YPPMMKKMIV FLIAFSSMMG 120
  121 PMGTSIIFPA INSITTEFKT SVIMVNVSIG VYLLSLGVFP LWWSSLSELE GRRTTYITSF 180
  181 ALLFAFNIGS ALAPDINSFI ALRMLCGAAS ASVQSVGAGT VADLYISEDR GKNLSYYYLG 240
  241 PLLAPLLSPI FGSLLVNRWP WRSTQWFMVI LSGCNVILLT VLLPETLRKQ DSKGAIAQIL 300
  301 AERRIQVDNN ERGEIQEDYQ RGEDETDRIE NQVATLSTEK HNYVGEVRDQ DSLDLESHSS 360
  361 PNTYDGRAGE TQLQRIYTEA SRSLYEYQLD DSGIDATTAQ VTRIRSTDPK LARSIRENSL 420
  421 RKLQTNLEEQ VKKVLSSNGG EIAPKQVSAV RKVWDTFFVY FIKPLKSLHF LEYPPVALAI 480
  481 TFSAISFSTV YFVNMTVEYK YSRPPYNFKP LYIGLLYIPN SVTYFFASIY GGRWVDMLLK 540
  541 RYKEKYGILA PEARISWNVV TSVISFPIAL LIFGWCLDKK CHWVTPLIGT ALFGYAAMMT 600
  601 IGATLSYLVD SLPGKGATGV ALNNLIRQIL AATAVFVTTP MLNGMGTGWA FTMLAFIVLG 660
  661 ASSVLIILKK HGDYWRENYD LQKLYDKID