YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGEQSPQGE KSLQRKQFVR PPLDLWQDLK DGVRYVIFDC RANLIVMPLL ILFESMLCKI  60
   61 IIKKVAYTEI DYKAYMEQIE MIQLDGMLDY SQVSGGTGPL VYPAGHVLIY KMMYWLTEGM 120
  121 DHVERGQVFF RYLYLLTLAL QMACYYLLHL PPWCVVLACL SKRLHSIYVL RLFNDCFTTL 180
  181 FMVVTVLGAI VASRCHQRPK LKKSLALVIS ATYSMAVSIK MNALLYFPAM MISLFILNDA 240
  241 NVILTLLDLV AMIAWQVAVA VPFLRSFPQQ YLHCAFNFGR KFMYQWSINW QMMDEEAFND 300
  301 KRFHLALLIS HLIALTTLFV TRYPRILPDL WSSLCHPLRK NAVLNANPAK TIPFVLIASN 360
  361 FIGVLFSRSL HYQFLSWYHW TLPILIFWSG MPFFVGPIWY VLHEWCWNSY PPNSQASTLL 420
  421 LALNTVLLLL LALTQLSGSV ALAKSHLRTT SSMEKKLN

Type	Start	End	Confidence
Cytoplasmic	1	127	0.70
Transmembrane Helix	128	149	0.87
Non-Cytoplasmic	150	175	0.82
Transmembrane Helix	176	195	0.90
Cytoplasmic	196	204	0.88
Transmembrane Helix	205	227	0.78
Non-Cytoplasmic	228	241	0.64
Transmembrane Helix	242	264	0.82
Cytoplasmic	265	302	0.93
Transmembrane Helix	303	323	0.90
Non-Cytoplasmic	324	350	0.88
Transmembrane Helix	351	370	0.89
Cytoplasmic	371	379	0.73
Transmembrane Helix	380	401	0.91
Non-Cytoplasmic	402	418	0.87
Transmembrane Helix	419	443	0.86
Cytoplasmic	444	458	0.94