YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.61
Transmembrane Helix	29	54	0.83
Non-Cytoplasmic	55	77	0.59
Transmembrane Helix	78	103	0.78
Cytoplasmic	104	110	0.59
Transmembrane Helix	111	135	0.86
Non-Cytoplasmic	136	144	0.47
Transmembrane Helix	145	168	0.80
Cytoplasmic	169	179	0.50
Transmembrane Helix	180	204	0.87
Non-Cytoplasmic	205	224	0.55
Transmembrane Helix	225	247	0.90
Cytoplasmic	248	256	0.49
Transmembrane Helix	257	276	0.51
Non-Cytoplasmic	277	288	0.71
Transmembrane Helix	289	308	0.93
Cytoplasmic	309	319	0.86
Transmembrane Helix	320	342	0.86
Non-Cytoplasmic	343	357	0.74
Transmembrane Helix	358	379	0.90
Cytoplasmic	380	385	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFRKSNVYL SLVNSYIIDS PQPSSINYWW NMGSLLGLCL VIQIVTGIFM AMHYSSNIEL  60
   61 AFSSVEHIMR DVHNGYILRY LHANGASFFF MVMFMHMAKG LYYGSYRSPR VTLWNVGVII 120
  121 FILTIATAFL GYCCVYGQMS HWGATVITNL FSAIPFVGND IVSWLWGGFS VSNPTIQRFF 180
  181 ALHYLVPFII AAMVIMHLMA LHIHGSSNPL GITGNLDRIP MHSYFIFKDL VTVFLFMLIL 240
  241 ALFVFYSPNT LGHPDNYIPG NPLVTPASIV PEWYLLPFYA ILRSIPDKLL GVITMFAAIL 300
  301 VLLVLPFTDR SVVRGNTFKV LSKFFFFIFV FNFVLLGQIG ACHVEVPYVL MGQIATFIYF 360
  361 AYFLIIVPVI STIENVLFYI GRVNK