YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108705794
Protein type:	Globular with Signal Peptide
Type Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVPSAPAPD AHRRGVFLLS VGAGGGGAGT AVVEVEVEHP HSLSLSPPPM SSCGRYILHR  60
   61 VCRFDTLAGV AIKYGVEVAD VKRVNGLTTD LQMFAHKTLR IPLPGRHPPA ATATATAPSH 120
  121 PPPSSSPAAT HRPREWATRR PPKNSALDPL LKPPQSTVAP SMDLLQNYYG LARPPKGDPE 180
  181 NEGTEMATYS IGQHTKARSL STGFSLVNGE VDDAEKPIRR RQKSDAEFST REGNSGGVLM 240
  241 KAGPGLALRP KSGSRPEINN SQQDLVATAV PSYGDGLQAV RKSSSTPEFQ DSDNSIASVW 300
  301 LKSKWNLKPD AFTLPLPILL LDSIPKPIFD TFPKQIAAWR NKAARD

Type	Start	End	Confidence
Signal Peptide	1	30	0.48
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	346	0.99