YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	shk-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGNSEEGK GMLLRNGDDR IRLPSPQRGT PDTSSTQGHP YTDQIVTINV SGMRFQTFES  60
   61 TLSRYPNSLL GDRNKRQHFF VSDTNEFFFD RHRTTFESIL YIYQSGGRVK RPEIVPIDIF 120
  121 LKEMRFFQMG DDLLEEFWIA EGYEKPKEVM MPNNKTQRKI WELMEYPDSS LSARIIAFIS 180
  181 IAVIALSIIS FCWETVPSDI EEKPINNSAT AELLDEMDEK HYSPFFWIEL MCILWFTIEL 240
  241 ILRFISCPCK VTFATSVLNI IDFVAIAPFF VNFFFADTSK SNSSMSFAVL RVLRLVRVFR 300
  301 VFKLSRHSVG LQILGKTFRS SVQEFCLLIF FMAIALVLFA SGMYFAEQGE PNSKFTSIPA 360
  361 SFWFVLVTMT TVGYGDLVPL SPFGKVVGGM CAMIGVLTLA LPVPIIVANF KHFYRQENRL 420
  421 ASMKSKGDDA DDDIA

Type	Start	End	Confidence
Cytoplasmic	1	170	0.97
Transmembrane Helix	171	192	0.89
Non-Cytoplasmic	193	224	0.91
Transmembrane Helix	225	245	0.92
Cytoplasmic	246	254	0.73
Transmembrane Helix	255	276	0.88
Non-Cytoplasmic	277	324	0.71
Transmembrane Helix	325	346	0.92
Cytoplasmic	347	354	0.65
Transmembrane Helix	355	378	0.81
Non-Cytoplasmic	379	385	0.62
Transmembrane Helix	386	410	0.86
Cytoplasmic	411	435	0.69