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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: kcnl-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.76
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQKKSSGER RRRSELTNGH SVPNNRKTSC QVVGAPRRST LAPGSTALMA LSQFDSRRFS  60
   61 TIDGPIALRR QSTKRRVIKS DPKQIIHIFT NPYDRYVNGG VRFDNDVIEE GTASGAASGG 120
  121 VGTPKKIAGF RRRQSGYGIA ISSDSTAKMR CRLRKQLFIR RNKVCDISLF LAVLGLLLVI 180
  181 IDSELTALSS STGITKDSPI SIILRSACVV STFFLICCLI NYHAIEVKIA LIDSGADDWR 240
  241 VAFSTDRFIK MLIEVCVCMI CPFPEIFSDG LMKMPYINAD TRQVKMRDVP IDVLLSVPMF 300
  301 LRSYLVCRFM VLHSKQFQDA ATRSIAALNR ISMDFRFVIK TMMADHPLRV LIVFTLSYWM 360
  361 CMSWMFTQCE RYDGQLEVEH YYLNSMWFIM VTFMSIGYGD IVPNTYCGRC LSITTGIVGA 420
  421 GVSSALIAII SRKLELSRAE KHVNNFMADS KLTNQRKNAA ASVLQETWFI HKYKKALHKG 480
  481 DDLRLRHHQR RFLHSINEFR RIKWDQRKLQ EKGNSLLDVG KLHSDMHETL WEMHRTQDHF 540
  541 ISQIDVLTQK IMELQMTLNT RPPCCAPPTS SSNDAYFSTS TQLGTVLPTV IPTIPLPPTQ 600
  601 SPMLHASQSH REPLQVTTTT TTSSDGLPRI SVGSTSSTAT SASSGNGSLP QCTVDQLSNC 660
  661 PTGGIYATVT TPLISNFEEV 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle