YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66911445
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPLLLLSLA LFSDAMVMDE KVKSGVELDT ASAICNYDAH YKDHTKYWCR GYFRDSCNII  60
   61 AFTPNSSNRV ALKDTGDQLI ITVSCLVKED TGWYWCGIQR DFARDDMDFT KLIVTDNRED 120
  121 RANGLSPGTS GNRTRSCKTS KAVQKAEGSR MSILIVCVLI SGLGIIFLIS HMSRGRRSQR 180
  181 NRGVTGKSIN RNPQASQAPS MVSIPLTVLP KVPRQNGQQK ALQWTGNATK TG

Type	Start	End	Confidence
Signal Peptide	1	15	0.91
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	150	0.93
Transmembrane Helix	151	172	0.92
Cytoplasmic	173	232	0.91