YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56698112, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.98
Transmembrane Helix	31	55	0.93
Non-Cytoplasmic	56	74	0.90
Transmembrane Helix	75	99	0.90
Cytoplasmic	100	108	0.83
Transmembrane Helix	109	131	0.85
Non-Cytoplasmic	132	163	0.89
Transmembrane Helix	164	186	0.68
Cytoplasmic	187	217	0.63
Transmembrane Helix	218	240	0.75
Non-Cytoplasmic	241	259	0.87
Transmembrane Helix	260	279	0.95
Cytoplasmic	280	309	0.91
Transmembrane Helix	310	332	0.88
Non-Cytoplasmic	333	354	0.89
Transmembrane Helix	355	375	0.94
Cytoplasmic	376	390	0.84
Transmembrane Helix	391	413	0.91
Non-Cytoplasmic	414	424	0.82
Transmembrane Helix	425	446	0.84
Cytoplasmic	447	484	0.90
Transmembrane Helix	485	506	0.86
Non-Cytoplasmic	507	537	0.92
Transmembrane Helix	538	558	0.92
Cytoplasmic	559	565	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPQNPPGPA MADTRYAAHG SRRRLSSGTR LLGGLAFAIA AACLLPMVAV ALAALTGGTD  60
   61 TLAHLLETVL PGYAATTLLL VALVAAGTFA VGVGAAWLVT MTRFPGVRLL EIALVLPLAF 120
  121 PAYVLAYAYT FVLDHPGVVQ TTLRQVTGWG PRDYWFPEIR STEGAAVMLI LVLYPYVYLL 180
  181 ARAAFLQQSA SAFLAARALG TGPWVAFWRV SLPMARPAIA GGVLLAVMET IADFGTVAYF 240
  241 GVQTFATGIY TSWFSMADRA AAAQLALCLL GFALLLAVAE RTQRGKARYY QSGRRHAALP 300
  301 AGELKGWQAA GAFTLCAVPV VLGFVLPVVI LVQMGLESEQ NLLSRRYVGF IRNSLTLAGT 360
  361 AAVVTVTAAI CVGFFQRLRP GRRSDGAAYL ARLGYAVPGG VIAVGLIVPF AAFDNALDAW 420
  421 MRAQFGLSTG LLITGSIWLL IAAYMVRFLA AALGAYEGGQ SMVHANMDAA ARSLGQGPLG 480
  481 TLRRIHLPIL TPSLMTALLI VFVDVMKELP ATLIMRPFNF DTLAVQAYRL ASDERLEGAA 540
  541 VPSLVILAMG LLPVILICRQ VGRGR