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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: seq-PA
Protein type: Globular with Signal Peptide
Type Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQSRKFEGK IPKLSQTSAA TGGATAAAEA STSKSSQGQQ QQIVYVNMLP AANTLNGIPQ  60
   61 QQQQQQYAST DGNVYQLQNE ILCDANGHAV TAATASYQTT ASSPQQQQQQ QQQQQNVATS 120
  121 VADNVVTTIS SSSILHTNAN TNGVDTLAAT QQQQQQQQQQ QQQQQQQHYH YITTTGEDGQ 180
  181 TPTTIVFENY NGGMPAVSSA APTPVPVSQA NAPATTTTTA LVNTDGTIIE FDGSTYEEYH 240
  241 VLKSEPGSSD CLSNGSSAVA ADIIKYDPQH GVVGDEEDDD ENGMLHVKYE EQSLEHDPEN 300
  301 EHDAEQEHEY EEYQVIKAEV EAEAAELAAG TTSYTISQEQ TGSGNTVLSS MVPKSGSAAA 360
  361 AKQKRKRKTR VIADDEQGEY LEKMSVRGLD IARYEHIIDG VAYCLVCAKN DIFKTFKNKY 420
  421 SFQRHAYLFH EGQNRKIFAC PICNKEFSRP DKMKMHKKDK HGDVPMPPSA TTTPLKADGP 480
  481 PAKRARTART PRVRKTKDGS TPTKKRLAQI DSVLDDVQNG ESLTMAPVSV SHSQQQQQQQ 540
  541 IQHSITTLAP STPSQPQHQL QTLPSLDFSG MILPGGAQLA LANPGATSSV GLQRGPATPN 600
  601 GQPAPPTTTL IYSNQLELQQ ALLQQQLQGQ SIMIQDQAGN LVPLQLDGTQ AIYTTAPQAQ 660
  661 RQQTTATYQT TQQQQQQPAQ QPAGQAQQQP HYELDNVTYL SSTAAATPTS AEQQQQQQQQ 720
  721 QHVIGTVQSY QILTPDGLQN FQPKLETAEL GDLCPYSQYT FTTHAGAQPT LNANALDAQT 780
  781 QHQQHHQQQQ HHHQQQQHHQ QTQLLQQQPF ATHHNPHQQF MELKNELLIK GGDAYTLDTA 840
  841 SMYHLPFSPT SMINAVNDVN TSSLLETKEI SYDISEAVLL AL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle