YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	D2R-PE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGGFGDAEL LQRTATVARE TLGNRTAPST TSYDGGGSGD VGVAGGLAGT AGGGVGGAGG  60
   61 SGGSTFMLLL ENFNDYFPNY NGSTVSGTST IAPGVAITGS RGSGLLLEQN LTGLYLDGYR 120
  121 LNCTNETLNL TDSCGELRVV DHNYWALILI LFPILTLFGN ILVILSVCRE RSLQTVTNYF 180
  181 IVSLAIADLL VAVVVMPFAV YFLVNGAWAL PDVVCDFYIA MDVICSTSSI FNLVAISIDR 240
  241 YIAVTQPIKY AKHKNSRRVC LTILLVWAIS AAIGSPIVLG LNNTPNREPD VCAFYNADFI 300
  301 LYSSLSSFYI PCIIMVFLYW NIFKALRSRA RKQRAARKPH LSELTGGSVI ENIAQTRRLA 360
  361 ETALDSSRHA SRILPDEAAT NTASGSNEEE DENAISPDID DCHVIVNDKS TEFMLATVVE 420
  421 ETGNVAMKPL SFVRYGVQEA MTLARNDSTL STTSKTSSRK DKKNSQASRF TIYKVHKASK 480
  481 KKREKSSAKK ERKATKTLAI VLGVFLFCWL PFFSCNIMDA MCAKFKKDCR PGLTAYMMTT 540
  541 WLGYINSFVN PVIYTIFNPE FRKAFKKIMH MG

Type	Start	End	Confidence
Cytoplasmic	1	42	0.49
Transmembrane Helix	43	70	0.75
Non-Cytoplasmic	71	144	0.79
Transmembrane Helix	145	168	0.90
Cytoplasmic	169	178	0.86
Transmembrane Helix	179	201	0.92
Non-Cytoplasmic	202	217	0.84
Transmembrane Helix	218	238	0.94
Cytoplasmic	239	258	0.89
Transmembrane Helix	259	280	0.94
Non-Cytoplasmic	281	299	0.95
Transmembrane Helix	300	323	0.89
Cytoplasmic	324	493	0.99
Transmembrane Helix	494	513	0.91
Non-Cytoplasmic	514	539	0.84
Transmembrane Helix	540	558	0.92
Cytoplasmic	559	572	0.92