YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ptr-12
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDLRVKYVI PNFYLANVFV RKPGDLTDGA RLQRLNQFVE EMEHLNGSWG SLGTNYFVRD  60
   61 FVNFQAAMVE EEEAEGGEEE ASIVKRGGID VNNLPMFLEW PEYLFWKGFV QFHSAENRTV 120
  121 LDRFFITFAI HGTNLQSWPA RGDALREWRN VVDKYSAEFG LSVFSDDGIY VDLIENMPTD 180
  181 AWQSAVATLA CMAFICFVFM YDVPTVMVAT SIIASIMTGI LGILSLTGTD LDPIVMSALI 240
  241 ISIGFSVDIP AHISYHYHTS PSDNGIRHRL HKTLSSVGFP ALQATVSTSL CVLSLKFSSI 300
  301 YMSCAFVKTM ITCMILCVFH ALVLLPCLFA IFHRIHSLFR VPKTSPIESK

Type	Start	End	Confidence
Cytoplasmic	1	180	0.77
Transmembrane Helix	181	201	0.88
Non-Cytoplasmic	202	205	0.55
Transmembrane Helix	206	228	0.87
Cytoplasmic	229	233	0.57
Transmembrane Helix	234	256	0.83
Non-Cytoplasmic	257	276	0.58
Transmembrane Helix	277	300	0.76
Cytoplasmic	301	309	0.45
Transmembrane Helix	310	333	0.89
Non-Cytoplasmic	334	350	0.54