YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE39603
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTLTEEESD KAAEKEKRDL VWDSRITTLT IILNVSLIIA KSIVAYFSGS LAILASVVDS  60
   61 FMDITSGVVV WYACYKIEKM NKEQYPVGMR KLEPLTVVIV GMIMLFANFI VLERATVQTI 120
  121 EDKLDPRVDL TTLIVLCTGT ATKFCLFMIC RVRKSAACLV LAIDQRNDCL TNIVALLGAW 180
  181 IGQNWWKYAD PLGAFMVSGF IIVTWFLTIR EHIPYLIGRR ADQEFINRIT NISINHDQRI 240
  241 KALDTVHVYH FGEKFLVEVH AVFDEPAPLQ MAHDVAESLQ VKLEKLPFVE RAFVHCDYKF 300
  301 DGDEHV

Type	Start	End	Confidence
Cytoplasmic	1	25	0.90
Transmembrane Helix	26	45	0.91
Non-Cytoplasmic	46	51	0.77
Transmembrane Helix	52	75	0.91
Cytoplasmic	76	93	0.93
Transmembrane Helix	94	112	0.95
Non-Cytoplasmic	113	129	0.84
Transmembrane Helix	130	150	0.80
Cytoplasmic	151	167	0.73
Transmembrane Helix	168	183	0.76
Non-Cytoplasmic	184	190	0.66
Transmembrane Helix	191	209	0.94
Cytoplasmic	210	306	0.93