YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77553140, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGAHASRA SAPIIAGLTG ALRAAYKGFS PQLCNFHASV NNGLLHRRKI QLHFICSFRS  60
   61 IQARYNHSSA VAPKDYCETY IQFLRDKQIV PDSDPPSAKD VDLLYRFIDQ SKKLMVLTGA 120
  121 GMSTESGIPD YRSPNGAYSS GFKPLTHQEF VRSIRARRRY WARSYAGWRR FRRAQPNSAH 180
  181 YALASLERIG RVHSMVTQNV DRLHHRAGSK PVELHGSVYE VACLDCGTSI DRESFQEQVK 240
  241 DLNPKWALAI DSLEVGQPGS DKSFGMQQRP DGDIEIDEKF WEQDFDIPSC NQCGGVLKPD 300
  301 VVMFGDNVPE ERAESTKEAA RNCDALLVVG SALMTMSAFR LARLAHEANA PIAAITIGET 360
  361 RADSILSLKI NARCGEILPR ILQMGSLAVP NVS

Type	Start	End	Confidence
Signal Peptide	1	24	0.90
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	393	0.99