YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84666532, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.58
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENQNRNLLI ATVLSFVVIT AWMLLFPPAE PEAVQPEEVA ETLAPGATDG AATPPNAAEQ  60
   61 TGTDAAPEAT PDTTTTAQTL ENSPRIPVET PKLSGSISLI GGRIDDLHLS DYRVSLDKGS 120
  121 DTVTLLRPSG SDEAYYTLYG WAPGGNLGNA DVPGAMTQWE LEEGDTLTPE TPITLAWTND 180
  181 AGMIFRRTIS VDEDYLFTVR QSVENGSDIA QRLAPYGLIA RHGEPSNLKG FFILHEGVIR 240
  241 QDDTELSEID YKDARELDRD PREGAPAEAT AITENGWVGF TDHYWETILV PESGQPYTAV 300
  301 VKYVEGADIY QTEVRLPTIE VAPGATAEVS TRLFAGAKEW DTIRDYQNDE GIYRFLDSID 360
  361 WGMFFFLTKP IFAVLHWLHS FIGNMGWSII ALTFVIKMVL FPLAYRSYVS MAKMKELQPE 420
  421 MEKLREQAGD DRMKMQQGMM ELYKKNKVNP ASGCLPILLQ IPIWFSLYKV IFVTLELRHE 480
  481 PWFGWIRDLS APDPSSILNL FGLLPNAAPD PTSWFYFFSL GVLPILLGIS MWLQQKLNPA 540
  541 PADATQATIM NWMPWVFMFM LGRFASGLVI YWIANNTLTF IQQYTIMRSH GAKPDIFGNI 600
  601 KSSFKKKPAT EKK

Type	Start	End	Confidence
Signal Peptide	1	31	0.58
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	374	0.86
Transmembrane Helix	375	401	0.77
Cytoplasmic	402	451	0.88
Transmembrane Helix	452	472	0.74
Non-Cytoplasmic	473	512	0.79
Transmembrane Helix	513	533	0.95
Cytoplasmic	534	551	0.80
Transmembrane Helix	552	574	0.90
Non-Cytoplasmic	575	613	0.83