YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sru-12
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTMNNVSIQ GDQRYIDYKF DFLTFPVLVA CIPLTYLVPT VFIILKVFKC YFRNLVGKQE  60
   61 ATMNPHVFFV IVTAQLTSIF FMLSDYITIR LPFTGILTSW CASQQPNHLL KVLFFYTFYF 120
  121 TYVSWQFPFL LSILRLIPLY YPQKHNEVCA KTIKFAIPFI YLYPFIFGFS LIPAVGTCRQ 180
  181 LLGPYQFGAI FIWYTGNWFD IKLMNGSIFN LILWLLLCII SNLALYFKLK KLKNHRKSVI 240
  241 LQRAELSLSL TALSMLLSFV TTLICALIFI IFPTMAVYFI ALRPFGNDCE ICFGPWIFYL 300
  301 THPAFKKKKI LFWKDASKIG TIHTTF

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.91
Transmembrane Helix	23	45	0.89
Cytoplasmic	46	65	0.83
Transmembrane Helix	66	87	0.90
Non-Cytoplasmic	88	117	0.86
Transmembrane Helix	118	139	0.85
Cytoplasmic	140	158	0.87
Transmembrane Helix	159	183	0.83
Non-Cytoplasmic	184	205	0.93
Transmembrane Helix	206	227	0.93
Cytoplasmic	228	247	0.92
Transmembrane Helix	248	272	0.92
Non-Cytoplasmic	273	279	0.73
Transmembrane Helix	280	300	0.62
Cytoplasmic	301	326	0.64