YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	cat-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	122	0.94
Transmembrane Helix	123	144	0.92
Non-Cytoplasmic	145	153	0.70
Transmembrane Helix	154	174	0.88
Cytoplasmic	175	185	0.78
Transmembrane Helix	186	207	0.91
Non-Cytoplasmic	208	215	0.86
Transmembrane Helix	216	236	0.94
Cytoplasmic	237	256	0.94
Transmembrane Helix	257	276	0.96
Non-Cytoplasmic	277	296	0.87
Transmembrane Helix	297	316	0.92
Cytoplasmic	317	322	0.83
Transmembrane Helix	323	344	0.89
Non-Cytoplasmic	345	349	0.66
Transmembrane Helix	350	374	0.83
Cytoplasmic	375	382	0.74
Transmembrane Helix	383	404	0.90
Non-Cytoplasmic	405	411	0.80
Transmembrane Helix	412	435	0.85
Cytoplasmic	436	490	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYILDWIST YRNNRKILLL IVYIDWDENP IGPVGRSERR KESDRKNHNS KNREYNDRRK  60
   61 YMSPAAKKPP VETEEPAVRT ISEEERHKLL ASENVHVGLM FGSKALVQLL VNPWIGPLTN 120
  121 RIGYTMPMFG GFVIMFCSTI LFAFGDSYFT LWLARALQGV GSACTSTSGM GMLAQAYPDD 180
  181 LERGSAMGIA LGGLALGVLV GPPYGGLLYQ WSGKELPFVL LALLALFDGS IQFMVLQPKI 240
  241 DRGEPEGSSI KQLAKDPYII VAAGAITIGN LGIAMLEPSL PLWMMESWGA NSLERGAAFL 300
  301 PASISYLIGT NIFGPLAHRI GRWLSSFIGL VVIGFSLLSI PSATSVAGLI IPHALLGFSI 360
  361 GMIDASMFPL MGYLVDIRHV GVYGSIYAIA DAAFCFAFAL GPFFSGPLVK SLGFPTMMYI 420
  421 IAVISFLYAP LMFLLKNPPV LIEPTPQTQS VELRQNGDSR VTNENYERIE GMNIAGQLQQ 480
  481 NNMYSATSAF