YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE38808
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.97
Transmembrane Helix	9	30	0.91
Non-Cytoplasmic	31	95	0.96
Transmembrane Helix	96	117	0.92
Cytoplasmic	118	125	0.87
Transmembrane Helix	126	144	0.97
Non-Cytoplasmic	145	150	0.77
Transmembrane Helix	151	173	0.92
Cytoplasmic	174	189	0.79
Transmembrane Helix	190	207	0.92
Non-Cytoplasmic	208	210	0.55
Transmembrane Helix	211	235	0.79
Cytoplasmic	236	290	0.96
Transmembrane Helix	291	311	0.88
Non-Cytoplasmic	312	323	0.87
Transmembrane Helix	324	345	0.87
Cytoplasmic	346	359	0.78
Transmembrane Helix	360	379	0.93
Non-Cytoplasmic	380	390	0.88
Transmembrane Helix	391	413	0.89
Cytoplasmic	414	424	0.78
Transmembrane Helix	425	446	0.86
Non-Cytoplasmic	447	454	0.80
Transmembrane Helix	455	475	0.92
Cytoplasmic	476	528	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLNTNRFH WLCFFLWQFA LFFCCQQIFS IFYNFSPGLS CDDPSFQFSK PKCKLSKSEI  60
   61 CSELTANCSK IVIEEAPFHS MVQDFKMFCG TKAYDAAWVA TIQFIGVLIG AITYGHLGDH 120
  121 FGRKPVSFFG ISVGILFGVA SGFAPSWEVF AAFRFIVGTS IASILIVFYA YILEFIEPEQ 180
  181 RVFLRSFFNW GYARLVFTLA CFICGYWRSA AIATSLLSLP ILPVLLILPE SPKWFNTKKR 240
  241 FRDARAAEKR VAWLSGIPYV NDEDQSIEIS EKLEEKSTKI YTMKDLFTSW TIAYRTIVVG 300
  301 SLWFSTSLSA FGSDLNSGNL AGNFYLSQFV SGAVTAFAKI FVFLLDTYVP SFDRRRLHQY 360
  361 PQIAMILCYC VIMVLMILPE SDCGSQGSRD LAIIIINIIG VSFIEITWDA CYLVAVECFP 420
  421 TKIRTIGIGT CSLLARTGAL LAPQMAYLSD IYRPAPYAVV CSIGTISLLI SCVFLPDTKG 480
  481 VDLAALDPTE ELDYDRKKSM TENIVIQRKR TGTLAAARLS IVENNINA