YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	snf-11
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.86
Transmembrane Helix	16	36	0.89
Non-Cytoplasmic	37	46	0.75
Transmembrane Helix	47	66	0.95
Cytoplasmic	67	86	0.77
Transmembrane Helix	87	109	0.87
Non-Cytoplasmic	110	218	0.93
Transmembrane Helix	219	239	0.93
Cytoplasmic	240	247	0.83
Transmembrane Helix	248	270	0.88
Non-Cytoplasmic	271	300	0.86
Transmembrane Helix	301	319	0.92
Cytoplasmic	320	329	0.79
Transmembrane Helix	330	353	0.89
Non-Cytoplasmic	354	385	0.87
Transmembrane Helix	386	408	0.80
Cytoplasmic	409	432	0.86
Transmembrane Helix	433	451	0.94
Non-Cytoplasmic	452	465	0.76
Transmembrane Helix	466	488	0.90
Cytoplasmic	489	506	0.93
Transmembrane Helix	507	528	0.94
Non-Cytoplasmic	529	547	0.91
Transmembrane Helix	548	570	0.93
Cytoplasmic	571	610	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEATSVAER EQWSSWADFI MSCIGYAIGL GNVWRFPYLC YQNGGGAFLI PYCISLVFCG  60
   61 APLFILETSW GQLMSVGGLG MFKICPIFKG VGIAAAVMAF WLNIYYIVVL SWAATYLYNS 120
  121 FTMSDVPWKN CDHAWNTPNC RSEYVKIPCD SNRTIAEFFN VKVLTHDHIH EYKKQFFVGE 180
  181 KMNWTVCSAA DLSVVSPVKE FWNHRVLGIS SGLENPGGIR WDLALFLLLV WIICYLCIFK 240
  241 GVKWTGKVVY ITASFPYMML FCLLIRGLTL EGAGVGLEFY LKPDFSKLLE SKVWVDAVTQ 300
  301 VFFSYGLGLG ALVALGSYNK FNNNVYKQAL TVCFVNSGTS VFAGFVIFSF IGFMATQQEK 360
  361 SVAEVAQAGP GLLFLAYPSG ILQLPYTQFW SCLFFLMVLF LGVDSQFCTM EGFFTAIIDE 420
  421 FPQIRRKKYG REIFVGVICV ISYLIGLTTV TEGGFYVFQL FDFYAASGWA LLWLLFFECI 480
  481 AISWSLGIDR WYEHMKSMIG YYPSAWWKFC WVFATPSVCF GVLLFGLIKY QPLRIDAYNY 540
  541 DYPVWGHIFG WFLSLSSMLC IPGYAIWIWF KTPGTVQEKI KLLCRPDIEI KGAMENAENL 600
  601 ELVEDFQNAI