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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: VSR7_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLVNGRASL TFLLAALTII AMVVEARFVV EKESISVLNP EEMRSKHDGS IANFGLPDYG  60
   61 GFLIGSVVYP DSKTDGCSAF GKTFKPKFPR PTILLLDRGG CYFALKAWHA QQAGAAAVLV 120
  121 ADNVDEPLLT MDSPEESKDA DGFIEKLTIP SVLIDKSFGD DLRQGFQKGK NIVIKLDWRE 180
  181 SVPHPDKRVE YELWTNSNDE CGARCDEQMD FVKNFKGHAQ ILEKGGYTAF TPHYITWFCP 240
  241 FQFINSPHCK SQCINHGRYC APDPEDNFRE GYEGKDVVLE NLRQLCVHRV ANESSRPWVW 300
  301 WDYVTDFHSR CSMKEKKYSI DCAESVIKSL NLPIEKIKKC IGDPEADTEN QVLRTEQVSQ 360
  361 IGRGNRGDVT ILPTLVINNA QYRGRLERTA VLKAICAGFN ETSEPAICLN TGLETNECLE 420
  421 NNGGCWQDTK ANITACQDTF RGRLCECPVV KGVQYKGDGY TSCTPYGPAR CTMNNGGCWS 480
  481 DTRNGLTFSA CSDSVSTGCK CPEGFQGDGL TCEDINECKE RSVCQCSGCR CKNSWGGYKC 540
  541 SCSGDRLYIN DQDTCIERYG SKTAWWLTFL ILAIVAVAGL AGYIFYKYRF RSYMDSEIMT 600
  601 IMSQYMPLES QRAREVPSEA EPFTL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle