YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: VHAA1_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.45
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEFLDKLPQ MDLMRSEKMT LVQLIIPVES AHRSITYLGE LGLLQFRDLN ADKSPFQRTF  60
   61 ANQVKRCGEM SRKLRFFKDQ IDKAGLRCSP RLEIEPDIAL GDLERQLADH EHEVLEMNSN 120
  121 SEKLRQTYNE LLEFKIVLEK ASGFLVSSNT HAIGEEIELH ESTYSNNGFI ETASLLEQEM 180
  181 NPGHSNQSGL RFISGIINKD KLLKFERMLF RATRGNMLFN QTTSDEEIMD PSTSEMVEKV 240
  241 VFVVFFSGEQ ARTKILKICE AFGANCYPVP EDTTKQRQLT REVLSRLSDL EATLDAGTRH 300
  301 RNNALNSVGY SLTNWITTVR REKAVYDTLN MLNFDVTKKC LVGEGWCPTF AKTQIHEVLQ 360
  361 RATFDSSSQV GVIFHVMQAV ESPPTYFRTN KLTNAFQEII DAYGVARYQE ANPAVYSVVT 420
  421 YPFLFAVMFG DWGHGLCLLL GALYLLARER KLSTQKLGSF MEMLFGGRYV ILLMALFSIY 480
  481 CGLIYNEFFS VPFHIFGGSA YKCRDTTCSD AYTVGLIKYR DPYPFGVDPS WRGSRTELPY 540
  541 LNSLKMKMSI LLGIAQMNLG LILSFFNARF FGSSLDIRYQ FIPQMIFLNS LFGYLSLLII 600
  601 IKWCTGSQAD LYHVMIYMFL SPTEELGENE LFWGQRPLQI VLLLLAFIAV PWMLFPKPFA 660
  661 LRKIHMERFQ GRTYGVLVSS EVDLDVEPDS ARGGGHHEEE FNFSEIFVHQ LIHSIEFVLG 720
  721 SVSNTASYLR LWALSLAHSE LSTVFYEKVL LLAWGYENIL IRLIGVAVFA FATAFILLMM 780
  781 ETLSAFLHAL RLHWVEFMGK FFNGDGYKFK PFSFALI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle