YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAT12_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	186	0.88
Transmembrane Helix	187	208	0.85
Non-Cytoplasmic	209	214	0.71
Transmembrane Helix	215	236	0.85
Cytoplasmic	237	241	0.68
Transmembrane Helix	242	261	0.79
Non-Cytoplasmic	262	278	0.70
Transmembrane Helix	279	299	0.86
Cytoplasmic	300	304	0.61
Transmembrane Helix	305	326	0.77
Non-Cytoplasmic	327	332	0.66
Transmembrane Helix	333	351	0.93
Cytoplasmic	352	360	0.82
Transmembrane Helix	361	381	0.93
Non-Cytoplasmic	382	444	0.93
Transmembrane Helix	445	466	0.86
Cytoplasmic	467	525	0.61
Transmembrane Helix	526	546	0.56
Non-Cytoplasmic	547	552	0.56
Transmembrane Helix	553	574	0.86
Cytoplasmic	575	583	0.82
Transmembrane Helix	584	603	0.93
Non-Cytoplasmic	604	638	0.92
Transmembrane Helix	639	660	0.87
Cytoplasmic	661	709	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSDPKPGP KPGPWPPTPE SAAMPPSSWA KKTGFRPKFS GETTATDSSS GQLSLPVRAK  60
   61 QQETQPDLEA GQTRLRPPPP VSAAVTNGET DKDKKEKPPP PPPGSVAVPV KDQPVKRRRD 120
  121 SDGVVGRSNG PDGANGSGDP VRRPGRIEET VEVLPQSMDD DLVARNLHMK YGLRDTPGLV 180
  181 PIGFYGLQHY LSMLGSLILV PLVIVPAMGG SHEEVANVVS TVLFVSGITT LLHTSFGSRL 240
  241 PLIQGPSFVF LAPALAIINS PEFQGLNGNN NFKHIMRELQ GAIIIGSAFQ AVLGYSGLMS 300
  301 LILRLVNPVV VAPTVAAVGL SFYSYGFPLV GKCLEIGVVQ ILLVIIFALY LRKISVLSHR 360
  361 IFLIYAVPLS LAITWAAAFL LTETGAYTYK GCDPNVPVSN VVSTHCRKYM TRMKYCRVDT 420
  421 SHALSSAPWF RFPYPLQWGV PLFNWKMAFV MCVVSVIASV DSVGSYHASS LLVASRPPTR 480
  481 GVVSRAIGLE GFTSVLAGLW GTGTGSTTLT ENVHTIAVTK MGSRRVVELG ACVLVIFSLV 540
  541 GKVGGFLASI PQVMVASLLC FMWAMFTALG LSNLRYSEAG SSRNIIIVGL SLFFSLSVPA 600
  601 YFQQYGISPN SNLSVPSYYQ PYIVSSHGPF KSQYKGMNYV MNTLLSMSMV IAFIMAVILD 660
  661 NTVPGSKQER GVYVWSDSET ATREPALAKD YELPFRVGRF FRWVKWVGI