YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50945195, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAALAFPTC CCCRRPSLRP SAGRRGRRPV ARCALPSSEN SFSWKEYAIS VALSAGLITG  60
   61 APTLGWPAHA SPLEPVIPDV SVLISGPPIK DPGALLRYAL PIDNKAVREV QKPLEDITDS 120
  121 LKIAGVRALD SVERNVRQAS RALSNGRNLI LGGLAESKRA NGEELLDKLA VGLDELQRIV 180
  181 EDRNRDAVAP KQKELLQYVG TVEEDMVDGF PYEVPEEYSS MPLLKGRATV DMKVKIKDNP 240
  241 NLEDCVFRIV LDGYNAPVTA GNFLDLVERK FYDGMEIQRA DGFVVQTGDP EGPAEGFIDP 300
  301 STGKVRTIPL ELMVDGDKAP VYGETLEELG RYKAQTKLPF NAFGTMAMAR DEFDDNSASS 360
  361 QIFWLLKESE LTPSNANILD GRYAVFGYVT ENEDYLADLK VGDVIESIQV VSGLDNLANP 420
  421 SYKIVG

Type	Start	End	Confidence
Signal Peptide	1	23	0.42
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	426	0.96