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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50931833, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.41
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPIMSGAAA AAGGTGGAVP LIKNATSASQ MSRGKAGTGA GAVVCYSPMM VTAYGIWQGA  60
   61 SPLDFSLPLF LLQVAIIVAT TRLLVILLKP FRQPRVIAEI LAGVILGPSV MGQVSTWAVK 120
  121 VFPERSLLTL ETVAHLGLLY FLFLVGLEMD VNTIRRSGKK ALIIAVAGMA LPFCIGTATS 180
  181 FIFRHQVSKN VHQASFLLFL GVALSVTAFP VLARILAEVK LLNSDLGRIA MSAAIVNDMC 240
  241 AWILLALAIA ISEVNSSAFS SLWVLIAGVA FVLACFYVVR PLMWWIVRRV PEGEAIGDVH 300
  301 ITLILTGVMV AGVCTDAIGI HSVFGAFVYG LVMPSGPLGV VLIEKLEDFV TGLLLPLFFA 360
  361 ISGLRTNVTK VRDPITVGLL VLVFVMASFA KIMGTILIAV SYTMTFRDGV ALGFLMNTRG 420
  421 LVEMIVLNIG RDKEVLDDES FAVMVLVSVA MTALVTPVVT TVYRPARRLV GYKRRNLQRS 480
  481 KHDAELRMLA CVHTTRNVPS IISLLELSNP TKRSPIFIYA LHLVELTGRA SNMLAAHHSA 540
  541 SNPGGASDHI FNAFESYEEM VGGVSVQALT AVSPYQTMHE DVCVLAEDKH VSLIVLPFHK 600
  601 QQTVDGGMEP INASLRGFNE SILASAPCSV GILVDRGLSA AAARMAAVHH VALLFFGGPD 660
  661 DREGLAYAWR MVENPGVCLT IVRLIPPGYT APAISPPQPP MPAAHSRAIN VVPEVAKSER 720
  721 QMDEEYLNEF RSRNLGNDAI LYVEQVVANS EETVAAIRSQ LDNAHELYIV GRHPGEASSP 780
  781 LTSALAEWME SPELGPIGDL LVSSEFSKMA SVLVMQQYVI TAPLPPPVAL AGPPTDDPVR 840
  841 QYLTNANQRP SVAIGGNQMG AAGRGGWSGG AGGY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle