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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|50928731, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVMSHLLLH GGVLLLLLAA AAVQAQRVAT KTDPTEAAAL NAVFAKLGQQ ASLSTATWNI  60
   61 SGDPCTGAAT DGTPIDDNPN FNPAIKCDCT FQNNTVCRIT KLKIYALDVP GTIPQELRNL 120
  121 TRLTHLNLGQ NTLTGPLPSF IGELTNMQNM TFRINSLSGP IPKELGNLTN LVSLGLGSNR 180
  181 FNGSLPSELG NLDKLQELYI DSAGLSGPLP SSFSKLTRMQ TLWASDNDFT GQIPDYIGNW 240
  241 NLTDLRFQGN SFQGPIPSAL SNLVQLSSLR IGDIENGSSS SLAFIGNMTS LSILILRNCK 300
  301 ISDNLASIDF SKFASLNLLD LSFNNITGQV PTALLGLNLL NSLFLGNNSL SGSLPSSKGP 360
  361 SLSTLDFSYN QLSGNFPPWA SGKNLQLNLV ANNFVIDSSN NSILPSGLAC LQRNTPCFLG 420
  421 SPQSSSFAVD CGSNRLISAS DNLRYQTDDA SLGPASYSVT GAPTWGVSNV GKFVDAPNGS 480
  481 YIIYSSRQFQ NTLDSELFQT SRMSPSSLRY YGIGLENGNY TVTLQFAEFG IEDTQTWKSL 540
  541 GRRVFDIYLQ GERQEKNFDI RKAAGDKSYT VVKKSYKVPV TKNFLEIHLF WAGKGTCCIP 600
  601 GQGYYGPTIS ALSVTPADFT PTVGIVAEQN KSTSKTGVIV GVVVGVAVLG LVALVGIFMW 660
  661 RQKRRKLTLE QQELYSIVGR PNVFSYSELR SATENFSSSN RLGEGGYGAV YKGKLNDGRV 720
  721 VAVKQLSQTS HQGKKQFATE IETISRVQHR NLVKLYGCCL EGNNPLLVYE YMENGSLDKA 780
  781 LFGIEKLNID WPARFDICLG IARGLAYLHE ESSIRVVHRD IKASNVLLDA NLNPKISDFG 840
  841 LAKLYDDKKT HVSTKVAGTF GYLAPEYAMR GHMTEKVDVF AFGVVLLETL AGRPNYDDTL 900
  901 EEDKIYIFEW AWELYENNNP LGIVDPNLRE FNRAEVLRAI HVALLCTQGS PHQRPPMSRV 960
  961 VSMLTGDTEV TDVLMKPSYI TEWQIKGGNT SFANSAVRGQ SSSAPGSTSQ QASSVFLNSI1020
 1021 IQEGR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle