YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125541426
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVLEDDMFP STPGKVKIER ATAMNRQLHR CFASTSTMFL WALFLVAMTA SYLSFQSFVD  60
   61 TSSKYFAASW GGLHWERQIR ASAAPRRPPG SAAGAGMSVL VTGAAGFVGT HCSLALRKRG 120
  121 DGVVGIDNFN SYYDPSLKKA RRSLLASHGV FVIEGDINDG RLLAKLFDVV PFTHVLHLAA 180
  181 QAGVRYAMEN PASYVHSNIA GLVTLLEACK DADPQPAIVW ASSSSVYGLN DKVPFTESDR 240
  241 TDQPASLYAA TKKAGEEITH TYNHIYGLSI TGLRFFTVYG PWGRPDMAYF SFTRNILQGK 300
  301 PITVYRGKNR VDLARDFTYI DDIVKGCLGS LDTAGKSTGT GGKKRGPAPY RIFNLGNTSP 360
  361 VTVPNLVSIL EKHLRVKAKK NVVEMPGNGD VPFTHANISL ARQQLGYKPT TNLDVGLKKF 420
  421 VKWYLSYYGY TRGSKNL

Type	Start	End	Confidence
Cytoplasmic	1	30	0.95
Transmembrane Helix	31	53	0.86
Non-Cytoplasmic	54	91	0.88
Transmembrane Helix	92	112	0.69
Cytoplasmic	113	437	0.60