YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47497675, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.77
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPARVHSNG RLLMLLLLLA VAGFAAAQPS QDNPPAGYYA TNFSPSMAIV IVVLIAAFFF  60
   61 LGFFSIYVRH CYGGRGDYST TPLPRSGAAR SRRQRGLDQS VLATFPTMAY ADVKAHKSVK 120
  121 GALECAVCIS EFDDDETLRL LPKCSHVFHQ DCIDTWLASH ATCPVCRANL VDGASEPASD 180
  181 VAAELPTAPA PRPEGATPSE AAAPGGEAPA AAAAAAVVID VEETEEERII REEAAELTRI 240
  241 GSLKRALRSK SGRAPAARFP RSHSTGHSLS SSAAASAGAE RFTLRLPEHV LREVIAAGQL 300
  301 QRTTSLVAFR AGRQGSTRRG LRSGGGGGGG EGSSRAGRSV RLGQSGRWPS FLPRTFSARL 360
  361 PAWGSRSTRR GDGDGSSKGG RTAGSGAGAG GK

Type	Start	End	Confidence
Signal Peptide	1	27	0.88
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	46	0.91
Transmembrane Helix	47	68	0.82
Cytoplasmic	69	392	0.85