YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50928385, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALDTLCSAG GDVLIYDTFN ASAAAAAAVV PPASFLFGNN NAGGAAGTET RVQVAAGAVP  60
   61 EVDQLLKQAQ QPGRRKRRRR ARSCKSREDA ESQRMTHIAV ERNRRRQMNE YLAVLRSLMP 120
  121 ESYVHRGDQA SIVGGAIDFV KELEQLLQSL EAQKRTLLMQ PPPPPQQQRE PKCDAADSTS 180
  181 AADQETPAAA AAAAAADGPP FARFFTYPQY VWCHNPAQDG GGGGGAAAEN RAGVADIEVS 240
  241 LVETHASIRV MAARRPGQLL KMVAGLQALR LTVLHLNVTA LGSLALYSIS VKRFHGGKAI 300
  301 ASLGPLGVFF LCALYLWYST TVVEEGCGMA TVDDIAAAVH HVLCIIDAEA ASQMLLAGEA 360
  361 SG

Type	Start	End	Confidence
Cytoplasmic	1	267	0.58
Transmembrane Helix	268	291	0.70
Non-Cytoplasmic	292	298	0.45
Transmembrane Helix	299	319	0.90
Cytoplasmic	320	362	0.49