YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60688319, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSYPRPWA SLLLVDLALL GLLQRSLGTL LPPGLPGLWL EGTLRLGVLW GLLKVGGLLR  60
   61 LVGTFLPLLC LTTPLFFSLR ALVGSTMSTS VLRVASASWG WLLAGYVAAA LSLAVWAVLS 120
  121 PAGAQEKEPG QENNRALMIR LLRLSKPDLP FLIVAFIFLA MAVWGETLIP HYSGRVIDIL 180
  181 GGDFDPDAFA SAIFFMCLFS VGSSLSAGCR GGSFLFTMSR INLRIREQLF SSLLRQDLAF 240
  241 FQETKTGELN SRLSSDTSLM SRWLPFNANI LLRSLVKVVG LYYFMLQVSP RLTFLSLLDL 300
  301 PLTIAAEKVY NPRHQAVLKE IQDVVAKAGQ VVREAVGGLQ TVRSFGAEEQ EVSRYKEALE 360
  361 RCRQLWWRRD LEKELYLVIR RVMALGMQVL ILNCGVQQIL AGEVTRGGLL SFLLYQEEVG 420
  421 HHVRNLVYMY GDMLSNVGAA EKVFSYLDRR PNLPKPGTLA PPRVEGRVEF QDVSFSYPSR 480
  481 PEKPVLQGLT FTLHPGKVTA LVGPNGSGKS TVAALLQNLY QPTGGKVLLD GEPLVQYDHH 540
  541 YLHRQVVLVG QEPVLFSGSV KDNIAYGLRN CEDAQVMAAA QAACADDFIG EMTNGINTEI 600
  601 GERGSQLAVG QKQRLAIARA LVRNPRVLIL DEATSALDAE CEQALQTWRS QEDRTMLVIA 660
  661 HRLHTVQNAD QVLVLKQGQL VEHDQLRDEQ DVYAHLVQQR LEA

Type	Start	End	Confidence
Cytoplasmic	1	8	0.70
Transmembrane Helix	9	28	0.75
Non-Cytoplasmic	29	34	0.59
Transmembrane Helix	35	53	0.65
Cytoplasmic	54	60	0.48
Transmembrane Helix	61	83	0.80
Non-Cytoplasmic	84	98	0.71
Transmembrane Helix	99	120	0.89
Cytoplasmic	121	147	0.87
Transmembrane Helix	148	168	0.89
Non-Cytoplasmic	169	188	0.91
Transmembrane Helix	189	214	0.87
Cytoplasmic	215	268	0.94
Transmembrane Helix	269	286	0.76
Non-Cytoplasmic	287	703	0.92