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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: UPL3_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METRSRKRAE ATSAAPSSSS SSPPPPPSAS GPTTRSKRAR LSSSSSSSLA PTPPSSSTTT  60
   61 RSRSSRSAAA AAPMDTSTDS SGFRRGGRGN RGNNNDNSDK GKEKEHDVRI RERERERDRA 120
  121 REQLNMDAAA AAARSADEDD DNDSEDGNGG FMHPNMSSAS SALQGLLRKL GAGLDDLLPS 180
  181 SGIGSASSSH LNGRMKKILS GLRAEGEEGK QVEALTQLCE MLSIGTEDSL STFSVDSFVP 240
  241 VLVGLLNHES NPDIMLLAAR ALTHLCDVLP SSCAAVVHYG AVSCLVARLL TIEYMDLAEQ 300
  301 SLQALKKISQ EHPTACLRAG ALMAVLSYLD FFSTGVQRVA LSTAANMCKK LPSDASDYVM 360
  361 EAVPLLTNLL QYHDSKVLEY ASICLTRIAE AFAPYPEKLD ELCNHGLVTQ AASLISTSNS 420
  421 GGGQASLSVS TYTGLIRLLS TCASGSPLGF RTLLLLGISS ILKDILLGSG VSANASVSPA 480
  481 LSRPADQIYE IVNLANELLP PLPEGVISLP TSTNALVKGS CQKKSSPSTS GKQEDILKIS 540
  541 PREKLLGDQP ELLQQFGLDL LPVLVQIYGS SVNGTIRHKC LSVIGKLMYF SSSEMIQSLI 600
  601 GDTNISSFLA GVLAWKDPQV LVPALQVAEI LMEKLPETFS KVFVREGVVH AVDQLVLVGK 660
  661 PSHASPTDKD NDCVPGSARS RRYRRRSSNA NSDGNQSEEP KNPASLTIGA NHNSLDTPTA 720
  721 SFMLRETVSS CAKAFKDKYF PSDGGDVDVG VTDDLLHLKN LCTKLTAGID DHKVKGKGKS 780
  781 KASGPFLGDF SASKEEYLIG VISEILGEIS KGDGVSTFEF IGSGVVAALL NYFSCGYFSK 840
  841 EKISELNLPK LRQEGLRRFK AFLEVALPFD GNEGKVPPMT VLIQKLQNAL SSLERFPVVL 900
  901 SHPSRSLSGS ARLSSGLSAL AHPLKLRLCR ASGEKTLRDY SSNIVLIDPL ASLAAVEEFL 960
  961 WPRVQRSESA LKPAAPIGNT EPGTLPSGAG VSSPSSSTPA STTRRHSSRS RSAINIGDTS1020
 1021 KKDPVHEKGT SSSKGKGKGV MKPAQADKGP QTRSNAQKRA VLDKDTQMKP ASGDSSSEDE1080
 1081 ELEISPVDID DALVIEEDDI SDDEDDDNED VLDDSLPMCT PDKVHDVKLA DSVDDDGLAT1140
 1141 SGRQMNPASG GTSGAAAARA SDSIDTGIGN SYGSRGALSF AAAAMAGLGA ASGRGIRGSR1200
 1201 DLHGRTLNRS SDEPSKLIFT AAGKQLSRHL TIYQAVQRQL MLDEDDDDRF GGSDLVSSDG1260
 1261 SRFNDIYTIM YQRPDSQVNR LSVGGASSTT PSKSTKSATT NSSVESQSHR ASLLDSILQG1320
 1321 ELPCDLEKSN STYNVLALLR VLEGLNQLCP RLRAQTLSDR FAEGKITSLD DLSTTAAKVP1380
 1381 LDEFVNSKLT PKLARQIQDA LALCSGSLPS WCYQLTRACP FLFPFQTRRQ YFYSTAFGLS1440
 1441 RALNRLQQQQ GADGSGSTNE REMRIGRLQR QKVRVSRNRI LDSAAKVMEM YSSQKAVLEV1500
 1501 EYFGEVGTGL GPTLEFYTLL SHDLQKASLG MWRSSSGDKV SMQIGRDEIE DGKPSAANRD1560
 1561 IVLAPLGLFP RPWPSTADIS EGGQFHKVIE YFRLLGRVMA KALQDGRLLD VPLSTAFYKL1620
 1621 ILGQELDLHD IVLFDAELGK TLQELRVVVA RKHYLEGVGG DNSSTISDLC LRGCRIEDLS1680
 1681 LEFTLPGYPE YILRSGDEIV DITNLEEYIS LVVDATVKRG VTRQIEAFRS GFNQVFDITS1740
 1741 LQIFTPSELD YLLCGRRELW EVETLAEHIK FDHGYNAKSP AIINLLEIMG ELTADQQRAF1800
 1801 CQFVTGAPRL PPGGLAVLNP KLTIVRKHSS TSSAAANGAG ASETADDDLP SVMTCANYLK1860
 1861 LPPYSTKEIM YKKLLYAINE GQGSFDLS

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