YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pdfr-PA
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLLSNILDC GGCISAQRFT RLLRQSGSSG PSPSAPTAGT FESKSMLEPT SSHSLATGRV  60
   61 PLLHDFDAST TESPGTYVLD GVARVAQLAL EPTVMDALPD SDTEQVLGNL NSSAPWNLTL 120
  121 ASAAATNFEN CSALFVNYTL PQTGLYCNWT WDTLLCWPPT PAGVLARMNC PGGFHGVDTR 180
  181 KFAIRKCELD GRWGSRPNAT EVNPPGWTDY GPCYKPEIIR LMQQMGSKDF DAYIDIARRT 240
  241 RTLEIVGLCL SLFALIVSLL IFCTFRSLRN NRTKIHKNLF VAMVLQVIIR LTLYLDQFRR 300
  301 GNKEAATNTS LSVIENTPYL CEASYVLLEY ARTAMFMWMF IEGLYLHNMV TVAVFQGSFP 360
  361 LKFFSRLGWC VPILMTTVWA RCTVMYMDTS LGECLWNYNL TPYYWILEGP RLAVILLNFC 420
  421 FLVNIIRVLV MKLRQSQASD IEQTRKAVRA AIVLLPLLGI TNLLHQLAPL KTATNFAVWS 480
  481 YGTHFLTSFQ GFFIALIYCF LNGEVRAVLL KSLATQLSVR GHPEWAPKRA SMYSGAYNTA 540
  541 PDTDAVQPAG DPSATGKRIS PPNKRLNGRK PSSASIVMIH EPQQRQRLMP RLQNKAREKG 600
  601 KDRVEKTDAE AEPDPTISHI HSKEAGSARS RTRGSKWIMG ICFRGQKVLR VPSASSVPPE 660
  661 SVVFELSEQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	244	0.81
Transmembrane Helix	245	265	0.94
Cytoplasmic	266	274	0.71
Transmembrane Helix	275	294	0.78
Non-Cytoplasmic	295	333	0.77
Transmembrane Helix	334	355	0.76
Cytoplasmic	356	366	0.57
Transmembrane Helix	367	387	0.76
Non-Cytoplasmic	388	408	0.89
Transmembrane Helix	409	430	0.90
Cytoplasmic	431	446	0.96
Transmembrane Helix	447	468	0.90
Non-Cytoplasmic	469	480	0.87
Transmembrane Helix	481	502	0.86
Cytoplasmic	503	669	0.98