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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|30259003, gi|...
Protein type: Transmembrane
Type Confidence: 0.73
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKQKQQKK KTHVPFRLNV LFFCVFLMFS AVIVRLGYVQ IVRGEEYKNE VERKENSTIS  60
   61 NPVPRGKIFD RYGRPVVDNA AVRTITFTKM KGSTAEARLE TAKKLADLIE VPTNKLTDRD 120
  121 KKDYWLAIHK EEAKEKITNK DRQEFKDKKI DDKELDERQR NRVTEEEVNQ LSAKDLEVLA 180
  181 IKSKMDGGYA MTPQVIKKDA TEQEYAIISE NLATLPGVDT NVDWDRKYIY DDLFRSVLGG 240
  241 VSTSDEGLPR ERLDYYLVRD YNRNDRVGKS YLEQQYEDSL HGNKAEVRNV TDKNGNILET 300
  301 INVSKGQSGN NLNLTIDMEL QKRVEEIITK NLLRYKGGQP YLDRAFVVMM NPKNGEVLSM 360
  361 AGKQLVEENG ETKVQDFALG TMTSSYPMGS TVKGATVLTG YQTGAIQPGS VQLDEPIRLK 420
  421 GTPPKSSWKT MGYINDLTAL KMSSNVYMFK TAMNIAGVQY VRGGTLDIPQ KAFDTMRYYF 480
  481 GQFGLGVKTG IDLPNESAGQ TGRGNQPGFL LDLSIGQYDT YTPLQLAQYV STIANGGYRM 540
  541 QPQVVKEIRQ PSAKQDEVGK VVHSMEPKVL NRIDMPESQI KRVQEGFRQV FNDSGGTAAK 600
  601 YFTGAPYKAA GKTGTAQTVY GGDKEIGKKA NGERKETYNL TLVGYAPLED PEVAFSVVVP 660
  661 WVDDKSGING YISRDIMDAY FDLKKVENGE ATKDEIDKKN KEQDDE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle