YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39995905, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIAKLHFAA KEMDEALAAA REVLSLYPDN SEAKNFTASV EREKKPGYVT FLQDCLKFLP  60
   61 VLLKGAVMTL LLVLCTMFIS PIGGLLIALG RISTFRPLSA LCWFVIWLFR GTPLLLQLFF 120
  121 IYYGLPSLGI TLKPITAAVI GLGLNYSAYL GEIIRGAIQS IDHGQTEAAK ALGMTYGQTM 180
  181 RRVVIPQTYK RLMPPIGNEF IALIKDTALV STIAMVELMR AADQMFNTYF NVTALVLAAV 240
  241 IYLIFTTFFT FLFEKIEHRA GIYERR

Type	Start	End	Confidence
Non-Cytoplasmic	1	65	0.60
Transmembrane Helix	66	90	0.87
Cytoplasmic	91	99	0.53
Transmembrane Helix	100	123	0.83
Non-Cytoplasmic	124	129	0.51
Transmembrane Helix	130	150	0.75
Cytoplasmic	151	200	0.67
Transmembrane Helix	201	219	0.54
Non-Cytoplasmic	220	229	0.69
Transmembrane Helix	230	253	0.88
Cytoplasmic	254	266	0.81