YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39995344, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDKRFLTPA EALNATVENG RRVLTQSLAR TVLLSLLAGF YIAFGAQLAT VVTQDAALHV  60
   61 GQGVARLLGG SVFSVGLMLV VICGAELFTG NSLLTVALLH GEITWVKMLE NWGVVLLGNL 120
  121 AGSLFFAWLM VESRLWENGA VGDQAVRIAA AKCAIPFGAA LIRGILCNWL VCLAVLMATA 180
  181 ARDVGGKMLA CYVPIMTFVT SGFEHSVANM YFIPTGLLVA GARGTTEPDL SWGAFMGNVV 240
  241 PVTIGNVIGG VIFVAIAYWF IHLKKEGKQA

Type	Start	End	Confidence
Cytoplasmic	1	30	0.95
Transmembrane Helix	31	51	0.92
Non-Cytoplasmic	52	69	0.84
Transmembrane Helix	70	94	0.82
Cytoplasmic	95	110	0.78
Transmembrane Helix	111	131	0.93
Non-Cytoplasmic	132	158	0.85
Transmembrane Helix	159	180	0.83
Cytoplasmic	181	187	0.82
Transmembrane Helix	188	208	0.85
Non-Cytoplasmic	209	239	0.87
Transmembrane Helix	240	261	0.94
Cytoplasmic	262	270	0.92