YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24351091, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTALFSLPIR KRDSQPVTLC RHLQGVLGLL LIGLTPITTV AAPATGEFIA NKRCELFQSK  60
   61 NKQTNPDDWQ SNIGERYPVA ELLGNSANPD WLRVRTNAIT SPLRWIKGDC GQYHASVAAE 120
  121 TYQPSSSGKP VQTTTASDIN AINSESLKEH GTSEKRQGNL CQIEDNYDSH VLALSWQSTF 180
  181 CELYGSRKAE CRALRQTTDA PQWQHFSLHG LWPNRQQCGT RYGFCSSVKQ QPSDFCDYPE 240
  241 VPLNASVQKN LEEVMPSARY GTCLERHEWW KHGTCRDQDP NDYFLLATQL TQEVNASVWV 300
  301 KEFIHQRIGK KVTQKELNQS FDTSFGQGAH TKVTLDCAKG LLNEIRINLP QEIKLSDSIP 360
  361 SLLAKAPKAK KTNCPDPLLI DMPN

Type	Start	End	Confidence
Signal Peptide	1	41	0.91
N-region	1	32
H-region	33	38
C-region	39	41
Cleavage Site	41	42
Non-Cytoplasmic	42	384	0.99