YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24376049, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRISPLHSAA LTFPEQTAVK CNGQDISYAS LSQMVLGLGE QLTRIGIRQG QPLACISRNN  60
   61 LEMICLYWAC IDIGAIFFPI SPRFPLAQVQ GLIDSHQIPC YWSETELGLT GCTQLSLDVA 120
  121 QISTTPAKTV DIQRPCNVIL TSGSSGFPKA AVHNLANHIA NAEGARSLIP LIKGDAWLLS 180
  181 LPLFHIGGLA ILNRCALVAA IVVLPESNLA LQEQVERDAL THISLVPTQL LNLLADKQAS 240
  241 LTSIKALLLG GGAVSIDLLK QLEQRHIASF TSYGMTEMGS QITTGPALSD GTSGKLLPRR 300
  301 ELKIVDDVIW VRGECLFMGY LTENGIEKPL DADSWFYTKD KGEWDANGNL KILGRVDNMF 360
  361 ICGGENIQPE EIEAALKLHP LIDEAIVFPQ PDITYGQLPA AIIRGNIIRG NTSQDMSTIE 420
  421 KQLEQFLADK IARFKRPRRY YPWPENAEQI GLKVNRQLII KLAI

Type	Start	End	Confidence
Signal Peptide	1	18	0.28
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	464	0.83