YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24350987, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	36	0.85
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	92	0.99
Transmembrane Helix	93	116	0.90
Cytoplasmic	117	136	0.97
Transmembrane Helix	137	159	0.95
Non-Cytoplasmic	160	182	0.93
Transmembrane Helix	183	205	0.86
Cytoplasmic	206	212	0.85
Transmembrane Helix	213	228	0.65
Non-Cytoplasmic	229	244	0.59
Transmembrane Helix	245	268	0.90
Cytoplasmic	269	277	0.59
Transmembrane Helix	278	300	0.92
Non-Cytoplasmic	301	342	0.67

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNKQLNKSL RSLFALMVLV MGLGLGSVMS ASPVQASDQQ SSQQQAKAQT SEADLWRAVK  60
   61 SGETGYTTAE GVEAGVLINV AGNQGKELRN QYITPIMALA VTGVFGVFLL FYLVNGPSKL 120
  121 SHGFSGKMVV RWSKADLWIH WIMAISCLVL MFTGLTIMLG KHVVQELLGP DIWAPLIYGS 180
  181 KTVHDWAGPI FIVSWIVCVV KWMPLQTFKM YDLKWFLVVG GYINFGPFKG KHPDSGFANA 240
  241 GEKMWFWTLT LFGLFISVSG IMLVLPGLDL PREASMAALL IHSISAVILI AFTIVHIWMA 300
  301 TVLSEGGMEC MKSGYCDENW AIQHHNLWYD EIKANGSLRY KD