YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24375172, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.82
Transmembrane Helix	11	33	0.88
Non-Cytoplasmic	34	66	0.89
Transmembrane Helix	67	88	0.89
Cytoplasmic	89	95	0.79
Transmembrane Helix	96	115	0.95
Non-Cytoplasmic	116	120	0.74
Transmembrane Helix	121	142	0.90
Cytoplasmic	143	149	0.83
Transmembrane Helix	150	174	0.90
Non-Cytoplasmic	175	193	0.82
Transmembrane Helix	194	213	0.92
Cytoplasmic	214	243	0.85
Transmembrane Helix	244	268	0.89
Non-Cytoplasmic	269	283	0.77
Transmembrane Helix	284	303	0.79
Cytoplasmic	304	311	0.55
Transmembrane Helix	312	331	0.94
Non-Cytoplasmic	332	338	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQYRWLWPT MMMLLILSSI LSVSVGPVSI SLMDSLSAVF NWATQQSIGN IAPHEQLVVS  60
   61 NVRLPRTLLA LTVGAILAQC GAVMQGLFRN PLADPGIIGV SSGAALGAAI CIVLFPDVGS 120
  121 LMISLGAFLC GLATTLIVYR LASNGLGTSV VLLLLSGVAI AALAGAGIGV LTYLANDMAL 180
  181 RDLTLWQMGS IAGAQWQYVG LCLLVLVLLS WRFQRDAMAL NALLLGEAEA RHLGINVDRL 240
  241 KLRLILLCAL GVGVSVAATG IIGFIGLVVP HLVRMILGPD HKRLLPMSAL LGAALLALAD 300
  301 IGARTFLPPA ELPVSLVTAL IGAPFFIFLL LQQRSKLI