YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24375058, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQALVAVVMG SKSDWPTMEA AAEIMDKLQV PYHVEVVSAH RTPDKLMEFA AGAADRGFKI  60
   61 IIGGAGGAAH LPGMIASKTR LPVLGVPVQS KALSGMDSLL SIVQMPKGIA VGTLAIGTAG 120
  121 AFNAGLLACQ ILANNDVALA ARLDAFREEQ TRAVLDNPDP REV

Type	Start	End	Confidence
Cytoplasmic	1	56	0.76
Transmembrane Helix	57	76	0.57
Non-Cytoplasmic	77	108	0.75
Transmembrane Helix	109	132	0.68
Cytoplasmic	133	163	0.59