YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24347328, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDSYSGYRL FTRLAVFLLL CLLIGLLVGN PLWILIIGLL GLVIWHYRQL ARLNFWLWRD  60
   61 RKLTPPQGSG SWEGVFNGIY RLQGKNRRRV GQLAALLGRF RQGAEALPDA AVVLDSEHNI 120
  121 LWCNKLAQLM LGFVWPQDNG QRIDNLIRHP DFSAYIKAGK YKEPLELTSP VSERRLLEIR 180
  181 IMAYGDRQLL LIARDITRIR QLEGMRKEFV ANVSHELKTP LTVLQGYLEM MQSMAEPDSM 240
  241 NAKPLALMQQ QTQRMQSMVE QLLVLSRIED AADIDLENTV NMSQLMDVLK EEAKALAKDK 300
  301 YELSFHCEPG LDSHGNELQL RSACSNLISN AIRYTEPGGK ISVQWRSVAT GGLFSVADTG 360
  361 EGIAPQHISR LTERFYRVDS ARSRQTGGSG LGLAIVKHAL SHHHSELNIS SELGKGSTFS 420
  421 FVIPQHLIER KK

Type	Start	End	Confidence
Cytoplasmic	1	13	0.80
Transmembrane Helix	14	47	0.85
Non-Cytoplasmic	48	432	0.71