YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372858, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.84
Transmembrane Helix	25	45	0.76
Non-Cytoplasmic	46	51	0.80
Transmembrane Helix	52	71	0.95
Cytoplasmic	72	80	0.75
Transmembrane Helix	81	97	0.94
Non-Cytoplasmic	98	103	0.78
Transmembrane Helix	104	124	0.90
Cytoplasmic	125	142	0.92
Transmembrane Helix	143	164	0.91
Non-Cytoplasmic	165	177	0.91
Transmembrane Helix	178	199	0.95
Cytoplasmic	200	218	0.96
Transmembrane Helix	219	238	0.96
Non-Cytoplasmic	239	245	0.79
Transmembrane Helix	246	263	0.98
Cytoplasmic	264	271	0.88
Transmembrane Helix	272	291	0.94
Non-Cytoplasmic	292	325	0.90
Transmembrane Helix	326	346	0.91
Cytoplasmic	347	355	0.89
Transmembrane Helix	356	378	0.89
Non-Cytoplasmic	379	393	0.82
Transmembrane Helix	394	414	0.91
Cytoplasmic	415	425	0.69
Transmembrane Helix	426	447	0.87
Non-Cytoplasmic	448	465	0.93
Transmembrane Helix	466	488	0.87
Cytoplasmic	489	516	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLGTNQVSK THSFMTVSLI ELWERFGYYG MQALIVYFMV QRLGFDDSRA NLVWSACAAL  60
   61 IYVSPAIGGW VGDKILGTKR TMLLGAGILS VGYALMTVPT ENTWFMFSAL GVIVVGNGLF 120
  121 KPNAGNLVRK IYEGDDSKID SAFTIYYMAV NVGSTFSMLL TPWIKDYVNA QYGNEFGWHA 180
  181 AFAVCCVGIL VGLGNYALMH KSLANYGSEP DTRPVNKKSL AIVLALAALS VVASAIILEY 240
  241 EDVARVFVYA AGVAVLGIFF HLIRTSEPSE RAGLIAALIL TVQTVFFFIF YQQMSTSLAL 300
  301 FALRNVDWDF QVFGTHLWTW SPAQFQALNP IWIMVLSPVL AWSYSWAGRN NKDFSIAAKF 360
  361 ALGFAVVAIG FFIYGFAGQF AVNGKTSSWV MIWGYASYSL GELLVSGLGL AMIARYVPAR 420
  421 MGGFMMGAYF VASGISQYLG GVVANFASVP QDLVDPLQTL PVYTNLFNKL GVAAVVCTII 480
  481 ALAVLPLMRR LTESHHAHSS IENNAAASLR DVKAEQ