YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372287, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.96
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	196	0.99
Transmembrane Helix	197	221	0.91
Cytoplasmic	222	242	0.80
Transmembrane Helix	243	265	0.87
Non-Cytoplasmic	266	276	0.76
Transmembrane Helix	277	297	0.96
Cytoplasmic	298	317	0.93
Transmembrane Helix	318	341	0.89
Non-Cytoplasmic	342	359	0.80
Transmembrane Helix	360	381	0.91
Cytoplasmic	382	392	0.82
Transmembrane Helix	393	415	0.86
Non-Cytoplasmic	416	421	0.64
Transmembrane Helix	422	438	0.86
Cytoplasmic	439	452	0.73
Transmembrane Helix	453	472	0.92
Non-Cytoplasmic	473	610	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLLSLTFT ALLLLAPLAL SGNAFANNFG FLKSEPELMP VDQAFAFDFK QEGNKVTLNW  60
   61 VIADGYYMYR DKLKFSVNGA ELGTIDLPKG KPHNDEYFGE QEVYYTYIDI PVGLKQADDN 120
  121 GTLSVTFMGC AEGKLCYPPT KRDVSLKAVA ANDGQIATTA ASDATEPVTA QTNANSATNA 180
  181 PITQQDSLSQ MLSNDSLLWT LVIFFGLGIG LALTPCVFPM YPILSGIIVG QGQKLSTAKA 240
  241 FTLSMAYVQG MAITYSILGL VVASAGMKYQ AALQHPAVLV VLAILFFVLS LSMFGLYDLK 300
  301 LPSRFQEKMN SISNNQKGGN LIGVFLMGVI SGLVASPCTT APLSGALVYV AQTGDLLQGF 360
  361 LALYVLSMGM GVPLLIIGTS GGKLLPRAGA WMNIIKTVFG FLLIAVSIVM LGRIWTGVVS 420
  421 DVLWSLWGIS FTGYLMHQNK LSAFNWKQTV RSVLLMLTLL ASFSYGFQAV MGHFGFNHSP 480
  481 VGNTATAEAE HGFKHIKSIE DLDRELAAAT AAGKPVMLDL YADWCVACKE FEAITFKDAE 540
  541 VLARMNKIVL LQADVTKSDA VDVALLEKYH VLGLPTLLMF NEQGEPREDL RVTGFMGPKE 600
  601 FAAHLDHLVK