YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24371703, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKHNKQEMV VRHKLFDRIC HWFIVAVGLV TFLTGFSFFY PSFQWLGAIA GTPQLAKFIH  60
   61 PIAGLLMCLP LMLMLVRYYH HNKWEKHDLA WMLAIKDVMF ENEEKIPPIG HYNPGQKVLF 120
  121 RAFVLTSITL TVTGFIMWQP YFAPYFSATV VGWAIVLHAI SALIMLMFVM VHFWMASWVE 180
  181 GSITGMLYGK VSKAWCRKHH PLMLDEHSDV EKH

Type	Start	End	Confidence
Cytoplasmic	1	18	0.99
Transmembrane Helix	19	40	0.94
Non-Cytoplasmic	41	57	0.90
Transmembrane Helix	58	79	0.92
Cytoplasmic	80	117	0.98
Transmembrane Helix	118	138	0.92
Non-Cytoplasmic	139	153	0.71
Transmembrane Helix	154	176	0.89
Cytoplasmic	177	213	0.98