YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52353423, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILRVSVMR LVVAAMAVAA GVLFFSGAGE ARVLLTLDDF GAVGDGITND TQAFLDAWNA  60
   61 ACASTEPAVL AVPAGKTYQI WPVRLAGPCK KKLKLMISGT IAAPASPDEW AGRDPTKWLY 120
  121 VFRVDDLSVS GGGTIDGMGA EWWARSCKRK KTKPCSTVSA PKALQFEECR RVSVQGITMQ 180
  181 NGPQFHLMFT RCTDVKASFL RVVAPESSPN TDGIHLNDTT HAQIMDNLIS TGDDCVSMVG 240
  241 NCSDVRVKDI SCGPGHGISI GSLGKNRTTD RIENVRVDTC LLTNTTNGVR IKSWQGGMGY 300
  301 AHNLRFEGIV MKNVSNPIII DQYYCDQPTP CANQTQAVEV RKIEFAGIRG TSATEQAIKL 360
  361 ACSDAVPCRD LELRNVNLTM VGGGAASAFC HRASGKAAGA VVPASCLAKA PHRMLGDATP 420
  421 AARVGS

Type	Start	End	Confidence
Signal Peptide	1	31	0.92
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	426	0.99