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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: MSH1_ARATH
Protein type: Transmembrane
Type Confidence: 0.58
Topology Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHWIATRNAV VSFPKWRFFF RSSYRTYSSL KPSSPILLNR RYSEGISCLR DGKSLKRITT  60
   61 ASKKVKTSSD VLTDKDLSHL VWWKERLQTC KKPSTLQLIE RLMYTNLLGL DPSLRNGSLK 120
  121 DGNLNWEMLQ FKSRFPREVL LCRVGEFYEA IGIDACILVE YAGLNPFGGL RSDSIPKAGC 180
  181 PIMNLRQTLD DLTRNGYSVC IVEEVQGPTP ARSRKGRFIS GHAHPGSPYV YGLVGVDHDL 240
  241 DFPDPMPVVG ISRSARGYCM ISIFETMKAY SLDDGLTEEA LVTKLRTRRC HHLFLHASLR 300
  301 HNASGTCRWG EFGEGGLLWG ECSSRNFEWF EGDTLSELLS RVKDVYGLDD EVSFRNVNVP 360
  361 SKNRPRPLHL GTATQIGALP TEGIPCLLKV LLPSTCSGLP SLYVRDLLLN PPAYDIALKI 420
  421 QETCKLMSTV TCSIPEFTCV SSAKLVKLLE QREANYIEFC RIKNVLDDVL HMHRHAELVE 480
  481 ILKLLMDPTW VATGLKIDFD TFVNECHWAS DTIGEMISLD ENESHQNVSK CDNVPNEFFY 540
  541 DMESSWRGRV KGIHIEEEIT QVEKSAEALS LAVAEDFHPI ISRIKATTAS LGGPKGEIAY 600
  601 AREHESVWFK GKRFTPSIWA GTAGEDQIKQ LKPALDSKGK KVGEEWFTTP KVEIALVRYH 660
  661 EASENAKARV LELLRELSVK LQTKINVLVF ASMLLVISKA LFSHACEGRR RKWVFPTLVG 720
  721 FSLDEGAKPL DGASRMKLTG LSPYWFDVSS GTAVHNTVDM QSLFLLTGPN GGGKSSLLRS 780
  781 ICAAALLGIS GLMVPAESAC IPHFDSIMLH MKSYDSPVDG KSSFQVEMSE IRSIVSQATS 840
  841 RSLVLIDEIC RGTETAKGTC IAGSVVESLD TSGCLGIVST HLHGIFSLPL TAKNITYKAM 900
  901 GAENVEGQTK PTWKLTDGVC RESLAFETAK REGVPESVIQ RAEALYLSVY AKDASAEVVK 960
  961 PDQIITSSNN DQQIQKPVSS ERSLEKDLAK AIVKICGKKM IEPEAIECLS IGARELPPPS1020
 1021 TVGSSCVYVM RRPDKRLYIG QTDDLEGRIR AHRAKEGLQG SSFLYLMVQG KSMACQLETL1080
 1081 LINQLHEQGY SLANLADGKH RNFGTSSSLS TSDVVSIL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle