YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TR140_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVTVECALL ITLIVEIIIG CLGNGFIAVV NIMDWTKRRR FSLVDQILTA LAISRLAFVW  60
   61 SLLTVLVISE LHSSLLITRK MLRIINNFWT VTNHFSIWLA TCLSIFYFLK IANFSNSIFL 120
  121 SLRWRVKTVV SLTLLVSLLL LLVNVIIINT CIVISVEGYK VNMSYSSHFN NNPQISRIPL 180
  181 FTNTMFTFIP FTVTLTIFLL LIFSLWRHLK KMQHRAKGPR DPSTTAHIKA LQMVVTFLFL 240
  241 YTIFFLALVM QAWNNEIQSK TVFNLVFESI ALAFPSGHSC VLILGNSKLR QAFLTIIWWL 300
  301 RSSFNAAELS SP

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.93
Transmembrane Helix	8	32	0.87
Cytoplasmic	33	50	0.80
Transmembrane Helix	51	69	0.88
Non-Cytoplasmic	70	93	0.81
Transmembrane Helix	94	114	0.88
Cytoplasmic	115	129	0.88
Transmembrane Helix	130	154	0.88
Non-Cytoplasmic	155	185	0.93
Transmembrane Helix	186	209	0.89
Cytoplasmic	210	229	0.91
Transmembrane Helix	230	250	0.93
Non-Cytoplasmic	251	264	0.85
Transmembrane Helix	265	286	0.79
Cytoplasmic	287	312	0.82