YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|30686059, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.92
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAYTSLNFL FLLTFFIGSL RVSAQLQDPT YVGHVCTNRI SRNSIYFSNL QTLLTSLSSN  60
   61 NAYFSLGSHS LTKGQNSDMV FGLYLCKGDL SPESCRECVI FAAKDTRSRC PGGKEFLIQY 120
  121 DECMLGYSDR NIFMDTVTTT TIITWNTQKV TADQSDRFND AVLSLMKKSA EEAANSTSKK 180
  181 FAVKKSDFSS SQSLYASVQC IPDLTSEDCV MCLQQSIKEL YFNKVGGRFL VPSCNSRYEV 240
  241 YPFYKETIEG TVLPPPVSAP PLPLVSTPSF PPGKGKNSTV IIIAIVVPVA ISVLICVAVF 300
  301 SFHASKRAKK TYDTPGANDE EDDITTAGSL QFDFKVIEAA TDKFSMCNKL GQGGFGQVYK 360
  361 GTLPNGVQVA VKRLSKTSGQ GEKEFKNEVV VVAKLQHRNL VKLLGFCLER EEKILVYEFV 420
  421 SNKSLDYFLF DSRMQSQLDW TTRYKIIGGI ARGILYLHQD SRLTIIHRDL KAGNILLDAD 480
  481 MNPKVADFGM ARIFEIDQTE AHTRRVVGTY GYMSPEYAMY GQFSMKSDVY SFGVLVLEII 540
  541 SGRKNSSLYQ MDASFGNLVT YTWRLWSDGS PLDLVDSSFR DSYQRNEIIR CIHIALLCVQ 600
  601 EDTENRPTMS AIVQMLTTSS IALAVPQPPG FFFRSNHEQA GPSMDKSSLC SIDAASITIL 660
  661 APR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle